生物信息学中的算法/会议录 Algorithms in bioinformatics

书籍目录

Measures of Codon Bias in Yeast, the tRNA Pairing Index and Possible DNA Repair MechanismsDecomposing Metabolomic Isotope PatternsA Method to Design Standard HMMs with Desired Length Distributionfor Biological Sequence AnalysisEfficient Model-Based Clustering for LC-MS DataA Bayesian Algorithm for Reconstructing Two-Component Signaling NetworksLinear-Time Haplotype Inference on Pedigrees Without RecombinationsPhylogenetic Network Inferences Through Efficient HaplotypingBeaches of Islands of Tractability: Algorithms for Parsimony and Minimum Perfect Phylogeny Haplotyping ProblemsOn the Complexity of SNP Block Partitioning Under the Perfect Phylogeny ModelHow Many Transcripts Does It Take to Reconstruct the Splice Graph?Multiple Structure Alignment and Consensus Identification for ProteinsProcrastination Leads to Efficient Filtration for Local Multiple AlignmentControlling Size When Aligning Multiple Genomic Sequences with DuplicationsReducing Distortion in Phylogenetic NetworksImputing Supertrees and Supernetworks from QuartetsA Unifying View of Genome RearrangementsEfficient Sampling of Transpositions and Inverted Transpositions for Bayesian MCMCAlignment with Non-overlapping Inversions in o(na)-TimeAccelerating Motif Discovery: Motif Matching on Parallel HardwareSegmenting Motifs in Protein-Protein Interface SurfacesProtein Side-Chain Placement Through MAP Estimation and Problem-Size ReductionOn the Complexity of the Crossing Contact Map Pattern Matching Problem……Author Index

作者简介

This book constitutes the refereed proceedings of the 6th International Workshop on Algorithms in Bioinformatics, WABI 2006, held in Zurich, Switzerland in September 2006 in the course of the ALGO 2006 conference meetings. The 36 revised full papers presented were carefully reviewed and selected from 100 submissions. All current issues of algorithms in bioinformatics are addressed, ranging from mathematical tools to experimental studies of approximation algorithms and reports on significant computational analyses. Numerous biological problems are dealt with, including genetic mapping, sequence alignment and sequence analysis, phylogeny, comparative genomics, and protein structure. For the first time also machine-learning approaches along with combinatorial optimization are covered.

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